IL_8CEH_020
3D structure
- PDB id
- 8CEH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.05 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8CEH|1|AA|A|519, 8CEH|1|AA|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CEH_020 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.0713
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CEH|1|AA|G|517
8CEH|1|AA|G|518
8CEH|1|AA|A|519
8CEH|1|AA|U|520
8CEH|1|AA|A|521
8CEH|1|AA|A|522
8CEH|1|AA|A|523
8CEH|1|AA|U|524
8CEH|1|AA|C|525
*
8CEH|1|AA|G|567
8CEH|1|AA|G|568
8CEH|1|AA|A|569
8CEH|1|AA|A|570
8CEH|1|AA|U|571
8CEH|1|AA|A|572
8CEH|1|AA|C|573
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L20-A
- Chain GG
- 60S ribosomal protein L4-A
- Chain JJ
- 60S ribosomal protein L7-A
- Chain PP
- 60S ribosomal protein L14-A
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