IL_8CEH_089

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEH_089 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.217

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

8CEH|1|AA|G|2206
8CEH|1|AA|A|2207
8CEH|1|AA|A|2208
8CEH|1|AA|U|2209
8CEH|1|AA|G|2210
*
8CEH|1|AA|C|2235
8CEH|1|AA|G|2236
8CEH|1|AA|C|2237

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA

Chain EE

60S ribosomal protein L2-A

Chain c

Small subunit ribosomal RNA; SSU rRNA