IL_8CEH_092

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

C(5MC)A(A2M)(A2M)UGCCUC(OMG)U*ACGCG

Length

18 nucleotides

Bulged bases

8CEH|1|AA|U|2282, 8CEH|1|AA|C|2287, 8CEH|1|AA|C|2306

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CEH|1|AA|C|2277
8CEH|1|AA|5MC|2278
8CEH|1|AA|A|2279
8CEH|1|AA|A2M|2280
8CEH|1|AA|A2M|2281
8CEH|1|AA|U|2282
8CEH|1|AA|G|2283
8CEH|1|AA|C|2284
8CEH|1|AA|C|2285
8CEH|1|AA|U|2286
8CEH|1|AA|C|2287
8CEH|1|AA|OMG|2288
8CEH|1|AA|U|2289
*
8CEH|1|AA|A|2303
8CEH|1|AA|C|2304
8CEH|1|AA|G|2305
8CEH|1|AA|C|2306
8CEH|1|AA|G|2307

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L41

Chain c

Small subunit ribosomal RNA; SSU rRNA