IL_8CEH_102

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

GUGUAGAAUAAGUGGGAG*CGCCAGUGAAAUACCACUAC

Length

38 nucleotides

Bulged bases

8CEH|1|AA|U|2460, 8CEH|1|AA|U|2464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CEH|1|AA|G|2452
8CEH|1|AA|U|2453
8CEH|1|AA|G|2454
8CEH|1|AA|U|2455
8CEH|1|AA|A|2456
8CEH|1|AA|G|2457
8CEH|1|AA|A|2458
8CEH|1|AA|A|2459
8CEH|1|AA|U|2460
8CEH|1|AA|A|2461
8CEH|1|AA|A|2462
8CEH|1|AA|G|2463
8CEH|1|AA|U|2464
8CEH|1|AA|G|2465
8CEH|1|AA|G|2466
8CEH|1|AA|G|2467
8CEH|1|AA|A|2468
8CEH|1|AA|G|2469
*
8CEH|1|AA|C|2476
8CEH|1|AA|G|2477
8CEH|1|AA|C|2478
8CEH|1|AA|C|2479
8CEH|1|AA|A|2480
8CEH|1|AA|G|2481
8CEH|1|AA|U|2482
8CEH|1|AA|G|2483
8CEH|1|AA|A|2484
8CEH|1|AA|A|2485
8CEH|1|AA|A|2486
8CEH|1|AA|U|2487
8CEH|1|AA|A|2488
8CEH|1|AA|C|2489
8CEH|1|AA|C|2490
8CEH|1|AA|A|2491
8CEH|1|AA|C|2492
8CEH|1|AA|U|2493
8CEH|1|AA|A|2494
8CEH|1|AA|C|2495

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA