IL_8CEH_168

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

UGU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEH_168 not in the Motif Atlas

Geometric match to IL_4KQ0_004

Geometric discrepancy: 0.16

The information below is about IL_4KQ0_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8CEH|1|c|U|150
8CEH|1|c|G|151
8CEH|1|c|U|152
*
8CEH|1|c|A|162
8CEH|1|c|G|163
8CEH|1|c|A|164

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain j

40S ribosomal protein S6-A