IL_8CEH_185

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

G(OMG)UGCCAG*CGG(OMU)AAUUCC

Length

18 nucleotides

Bulged bases

8CEH|1|c|A|579, 8CEH|1|c|U|581, 8CEH|1|c|U|582

QA status

Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CEH|1|c|G|561
8CEH|1|c|OMG|562
8CEH|1|c|U|563
8CEH|1|c|G|564
8CEH|1|c|C|565
8CEH|1|c|C|566
8CEH|1|c|A|567
8CEH|1|c|G|568
*
8CEH|1|c|C|575
8CEH|1|c|G|576
8CEH|1|c|G|577
8CEH|1|c|OMU|578
8CEH|1|c|A|579
8CEH|1|c|A|580
8CEH|1|c|U|581
8CEH|1|c|U|582
8CEH|1|c|C|583
8CEH|1|c|C|584

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 6

40S ribosomal protein S30-A

Chain Aa

Elongation factor 2

Chain g

RPS3 isoform 1

Chain z

40S ribosomal protein S23-A