IL_8CEH_222

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

GGUGCUAGC*GCUGGUUAUCC

Length

20 nucleotides

Bulged bases

8CEH|1|c|U|1370, 8CEH|1|c|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CEH|1|c|G|1351
8CEH|1|c|G|1352
8CEH|1|c|U|1353
8CEH|1|c|G|1354
8CEH|1|c|C|1355
8CEH|1|c|U|1356
8CEH|1|c|A|1357
8CEH|1|c|G|1358
8CEH|1|c|C|1359
*
8CEH|1|c|G|1364
8CEH|1|c|C|1365
8CEH|1|c|U|1366
8CEH|1|c|G|1367
8CEH|1|c|G|1368
8CEH|1|c|U|1369
8CEH|1|c|U|1370
8CEH|1|c|A|1371
8CEH|1|c|U|1372
8CEH|1|c|C|1373
8CEH|1|c|C|1374

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain s

40S ribosomal protein S16-A

Chain v

40S ribosomal protein S19-A

Chain w

40S ribosomal protein S20