IL_8CEH_248

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

UCUAGACAGC*GCCGAA

Length

16 nucleotides

Bulged bases

8CEH|1|AA|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CEH|1|AA|U|1218
8CEH|1|AA|C|1219
8CEH|1|AA|U|1220
8CEH|1|AA|A|1221
8CEH|1|AA|G|1222
8CEH|1|AA|A|1223
8CEH|1|AA|C|1224
8CEH|1|AA|A|1225
8CEH|1|AA|G|1226
8CEH|1|AA|C|1227
*
8CEH|1|AA|G|1282
8CEH|1|AA|C|1283
8CEH|1|AA|C|1284
8CEH|1|AA|G|1285
8CEH|1|AA|A|1286
8CEH|1|AA|A|1287

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain DD

60S acidic ribosomal protein P0

Chain E

60S ribosomal protein L20-A

Chain Y

Ubiquitin-60S ribosomal protein L40