IL_8CEH_265

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

8CEH|1|AA|U|1015, 8CEH|1|AA|C|1016, 8CEH|1|AA|C|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEH_265 not in the Motif Atlas

Homologous match to IL_8CRE_477

Geometric discrepancy: 0.4231

The information below is about IL_8CRE_477

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8CEH|1|AA|U|1014
8CEH|1|AA|U|1015
8CEH|1|AA|C|1016
8CEH|1|AA|C|1017
8CEH|1|AA|G|1018
*
8CEH|1|AA|U|1034
8CEH|1|AA|G|1035
8CEH|1|AA|A|1036

Current chains

Chain AA

25S ribosomal RNA

Nearby chains