IL_8CEP_022

3D structure

PDB id

8CEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Round2 30S head (no antibiotic)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEP_022 not in the Motif Atlas

Homologous match to IL_5J7L_024

Geometric discrepancy: 0.0439

The information below is about IL_5J7L_024

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8CEP|1|A|C|504
8CEP|1|A|G|505
8CEP|1|A|G|506
8CEP|1|A|C|507
8CEP|1|A|U|508
8CEP|1|A|A|509
8CEP|1|A|A|510
8CEP|1|A|C|511
*
8CEP|1|A|G|540
8CEP|1|A|G|541

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12