3D structure

PDB id
8CEP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Round2 30S head (no antibiotic)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.04 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CEP_028 not in the Motif Atlas
Homologous match to IL_5J7L_031
Geometric discrepancy: 0.061
The information below is about IL_5J7L_031
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

8CEP|1|A|G|654
8CEP|1|A|A|655
*
8CEP|1|A|U|751
8CEP|1|A|G|752
8CEP|1|A|A|753
8CEP|1|A|C|754

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
Small ribosomal subunit protein uS8
Chain O
Small ribosomal subunit protein uS15
Chain V
Capreomycin IA

Coloring options:


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