3D structure

PDB id
8CEP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Round2 30S head (no antibiotic)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.04 Å

Loop

Sequence
CAAAC*GGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CEP_034 not in the Motif Atlas
Homologous match to IL_5J7L_037
Geometric discrepancy: 0.0616
The information below is about IL_5J7L_037
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

8CEP|1|A|C|779
8CEP|1|A|A|780
8CEP|1|A|A|781
8CEP|1|A|A|782
8CEP|1|A|C|783
*
8CEP|1|A|G|799
8CEP|1|A|G|800
8CEP|1|A|U|801
8CEP|1|A|A|802
8CEP|1|A|G|803

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
Capreomycin IA
Chain I
Capreomycin IA
Chain K
Small ribosomal subunit protein uS11
Chain U
Small ribosomal subunit protein bS21

Coloring options:


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