3D structure

PDB id
8CEP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Round2 30S head (no antibiotic)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.04 Å

Loop

Sequence
GGG*UU
Length
5 nucleotides
Bulged bases
8CEP|1|A|G|926
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CEP_037 not in the Motif Atlas
Homologous match to IL_5J7L_040
Geometric discrepancy: 0.0895
The information below is about IL_5J7L_040
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

8CEP|1|A|G|925
8CEP|1|A|G|926
8CEP|1|A|G|927
*
8CEP|1|A|U|1390
8CEP|1|A|U|1391

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
Capreomycin IA

Coloring options:


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