IL_8CEP_044

3D structure

PDB id

8CEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Round2 30S head (no antibiotic)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEP_044 not in the Motif Atlas

Homologous match to IL_5J7L_064

Geometric discrepancy: 0.2032

The information below is about IL_5J7L_064

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8CEP|1|A|U|1440
8CEP|1|A|A|1441
8CEP|1|A|G|1442
*
8CEP|1|A|C|1460
8CEP|1|A|G|1461

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20