IL_8CEP_046

3D structure

PDB id

8CEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Round2 30S head (no antibiotic)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

UGAAGAA*UGUAAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEP_046 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1188

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8CEP|1|A|U|409
8CEP|1|A|G|410
8CEP|1|A|A|411
8CEP|1|A|A|412
8CEP|1|A|G|413
8CEP|1|A|A|414
8CEP|1|A|A|415
*
8CEP|1|A|U|427
8CEP|1|A|G|428
8CEP|1|A|U|429
8CEP|1|A|A|430
8CEP|1|A|A|431
8CEP|1|A|A|432
8CEP|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4