IL_8CEP_050

3D structure

PDB id

8CEP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Round2 30S head (no antibiotic)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.04 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEP_050 not in the Motif Atlas

Homologous match to IL_4LFB_070

Geometric discrepancy: 0.2658

The information below is about IL_4LFB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

8CEP|1|A|5MC|1407
8CEP|1|A|A|1408
8CEP|1|A|C|1409
*
8CEP|1|A|G|1491
8CEP|1|A|A|1492
8CEP|1|A|A|1493
8CEP|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Capreomycin IA

Chain L

Small ribosomal subunit protein uS12

Chain a

Large subunit ribosomal RNA; LSU rRNA