IL_8CEU_062

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEU_062 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0337

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8CEU|1|a|G|1651
8CEU|1|a|A|1652
8CEU|1|a|G|1653
8CEU|1|a|A|1654
8CEU|1|a|A|1655
8CEU|1|a|C|1656
*
8CEU|1|a|G|2004
8CEU|1|a|A|2005
8CEU|1|a|C|2006

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain m

Large ribosomal subunit protein bL17