IL_8CEU_115

3D structure

PDB id

8CEU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Retapamulin and Capreomycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.83 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8CEU|1|a|U|846, 8CEU|1|a|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CEU_115 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.0911

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8CEU|1|a|A|844
8CEU|1|a|A|845
8CEU|1|a|U|846
8CEU|1|a|U|847
8CEU|1|a|C|848
*
8CEU|1|a|G|930
8CEU|1|a|U|931
8CEU|1|a|U|932
8CEU|1|a|A|933
8CEU|1|a|U|934

Current chains

Chain a

23S rRNA

Nearby chains

Chain y

Large ribosomal subunit protein uL30