IL_8CF5_007

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

8CF5|1|AA|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_007 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.0875

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8CF5|1|AA|A|123
8CF5|1|AA|U|124
*
8CF5|1|AA|A|144
8CF5|1|AA|G|145
8CF5|1|AA|U|146
8CF5|1|AA|U|147
8CF5|1|AA|G|148
8CF5|1|AA|U|149

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain KK

60S ribosomal protein L8-A

Chain QQ

60S ribosomal protein L15-A

Chain T

60S ribosomal protein L35-A