IL_8CF5_017
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_017 not in the Motif Atlas
- Homologous match to IL_5TBW_016
- Geometric discrepancy: 0.0884
- The information below is about IL_5TBW_016
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8CF5|1|AA|U|429
8CF5|1|AA|U|430
8CF5|1|AA|U|431
*
8CF5|1|AA|A|628
8CF5|1|AA|U|629
8CF5|1|AA|A|630
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Q
- 60S ribosomal protein L32
- Chain R
- 60S ribosomal protein L33-A
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