IL_8CF5_018

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CAGAGG*CAUAAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CF5|1|AA|C|435
8CF5|1|AA|A|436
8CF5|1|AA|G|437
8CF5|1|AA|A|438
8CF5|1|AA|G|494
8CF5|1|AA|G|495
*
8CF5|1|AA|C|618
8CF5|1|AA|A|619
8CF5|1|AA|U|620
8CF5|1|AA|A|621
8CF5|1|AA|A|622
8CF5|1|AA|U|623
8CF5|1|AA|G|624

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain II

60S ribosomal protein L6-A

Chain Q

60S ribosomal protein L32

Chain R

60S ribosomal protein L33-A