IL_8CF5_027

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_027 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1549

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CF5|1|AA|C|758
8CF5|1|AA|U|759
8CF5|1|AA|G|760
8CF5|1|AA|A|761
8CF5|1|AA|U|762
8CF5|1|AA|G|763
*
8CF5|1|AA|C|768
8CF5|1|AA|G|769
8CF5|1|AA|G|770
8CF5|1|AA|A|771
8CF5|1|AA|U|772
8CF5|1|AA|G|773

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L28

Chain OO

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L42-A