IL_8CF5_038

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

8CF5|1|AA|U|979, 8CF5|1|AA|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CF5|1|AA|C|977
8CF5|1|AA|G|978
8CF5|1|AA|U|979
8CF5|1|AA|A|980
8CF5|1|AA|U|981
8CF5|1|AA|C|982
*
8CF5|1|AA|G|1101
8CF5|1|AA|A|1102
8CF5|1|AA|A|1103
8CF5|1|AA|G|1104

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain JJ

60S ribosomal protein L7-A

Chain N

60S ribosomal protein L29