IL_8CF5_041
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- AA*UUU
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_041 not in the Motif Atlas
- Homologous match to IL_8C3A_042
- Geometric discrepancy: 0.0837
- The information below is about IL_8C3A_042
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_18604.1
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 46
Unit IDs
8CF5|1|AA|A|997
8CF5|1|AA|A|998
*
8CF5|1|AA|U|1050
8CF5|1|AA|U|1051
8CF5|1|AA|U|1052
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain BB
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S ribosomal protein L21-A
- Chain HH
- 60S ribosomal protein L5
- Chain MM
- 60S ribosomal protein L10
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