IL_8CF5_058

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

8CF5|1|AA|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_058 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4096

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8CF5|1|AA|G|1234
8CF5|1|AA|U|1235
8CF5|1|AA|G|1236
8CF5|1|AA|G|1237
8CF5|1|AA|C|1238
*
8CF5|1|AA|G|1250
8CF5|1|AA|A|1251
8CF5|1|AA|A|1252
8CF5|1|AA|U|1253
8CF5|1|AA|C|1254

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain DD

60S acidic ribosomal protein P0

Chain Ee

60S ribosomal protein L12-A