IL_8CF5_080
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GGGAA*U(OMC)C
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_080 not in the Motif Atlas
- Geometric match to IL_7RQB_093
- Geometric discrepancy: 0.3624
- The information below is about IL_7RQB_093
- Detailed Annotation
- Major groove platform with extra pair
- Broad Annotation
- Major groove platform
- Motif group
- IL_63450.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 8
Unit IDs
8CF5|1|AA|G|1897
8CF5|1|AA|G|1898
8CF5|1|AA|G|1899
8CF5|1|AA|A|1900
8CF5|1|AA|A|1901
*
8CF5|1|AA|U|2336
8CF5|1|AA|OMC|2337
8CF5|1|AA|C|2338
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain FF
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L23-A
- Chain I
- 60S ribosomal protein L24-A
Coloring options: