IL_8CF5_108
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GG*UUC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_108 not in the Motif Atlas
- Homologous match to IL_5TBW_102
- Geometric discrepancy: 0.1213
- The information below is about IL_5TBW_102
- Detailed Annotation
- Major groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_48076.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 41
Unit IDs
8CF5|1|AA|G|2823
8CF5|1|AA|G|2824
*
8CF5|1|AA|U|2865
8CF5|1|AA|U|2866
8CF5|1|AA|C|2867
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain FF
- 60S ribosomal protein L3
- Chain MM
- 60S ribosomal protein L10
- Chain N
- 60S ribosomal protein L29
Coloring options: