3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
UUG*UG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CF5_110 not in the Motif Atlas
Geometric match to IL_5TBW_104
Geometric discrepancy: 0.0786
The information below is about IL_5TBW_104
Detailed Annotation
Major groove platform
Broad Annotation
No text annotation
Motif group
IL_48779.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

8CF5|1|AA|U|2826
8CF5|1|AA|U|2827
8CF5|1|AA|G|2828
*
8CF5|1|AA|U|2862
8CF5|1|AA|G|2863

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain Bb
Transfer RNA; tRNA
Chain MM
60S ribosomal protein L10

Coloring options:


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