IL_8CF5_116

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

8CF5|1|AA|A|2941, 8CF5|1|AA|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_116 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.0848

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8CF5|1|AA|C|2881
8CF5|1|AA|U|2882
*
8CF5|1|AA|A|2940
8CF5|1|AA|A|2941
8CF5|1|AA|C|2942
8CF5|1|AA|G|2943

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A

Chain Pp

Polypeptide