IL_8CF5_120

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GA(OMC)C*GGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_120 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2208

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8CF5|1|AA|G|2957
8CF5|1|AA|A|2958
8CF5|1|AA|OMC|2959
8CF5|1|AA|C|2960
*
8CF5|1|AA|G|2972
8CF5|1|AA|G|2973
8CF5|1|AA|U|2974
8CF5|1|AA|U|2975

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Bb

Transfer RNA; tRNA

Chain EE

60S ribosomal protein L2-A

Chain MM

60S ribosomal protein L10