IL_8CF5_148

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UUCCC*GAUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_148 not in the Motif Atlas

Geometric match to IL_5TBW_376

Geometric discrepancy: 0.1115

The information below is about IL_5TBW_376

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.9

Basepair signature

cWW-cSH-cWS-tSW-L-R-cWW-R

Number of instances in this motif group

9

Unit IDs

8CF5|1|BB|U|32
8CF5|1|BB|U|33
8CF5|1|BB|C|34
8CF5|1|BB|C|35
8CF5|1|BB|C|36
*
8CF5|1|BB|G|41
8CF5|1|BB|A|42
8CF5|1|BB|U|43
8CF5|1|BB|C|44
8CF5|1|BB|A|45

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain HH

60S ribosomal protein L5

Chain NN

60S ribosomal protein L11-A