IL_8CF5_165

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GGUAUAAC*GCUAAUAC

Length

16 nucleotides

Bulged bases

8CF5|1|c|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_165 not in the Motif Atlas

Homologous match to IL_8P9A_383

Geometric discrepancy: 0.297

The information below is about IL_8P9A_383

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8CF5|1|c|G|142
8CF5|1|c|G|143
8CF5|1|c|U|144
8CF5|1|c|A|145
8CF5|1|c|U|146
8CF5|1|c|A|147
8CF5|1|c|A|148
8CF5|1|c|C|149
*
8CF5|1|c|G|165
8CF5|1|c|C|166
8CF5|1|c|U|167
8CF5|1|c|A|168
8CF5|1|c|A|169
8CF5|1|c|U|170
8CF5|1|c|A|171
8CF5|1|c|C|172

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 0

40S ribosomal protein S24-A

Chain j

40S ribosomal protein S6-A