3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
G(OMG)UGCCAG*CGG(OMU)AAUUCC
Length
18 nucleotides
Bulged bases
8CF5|1|c|A|579, 8CF5|1|c|U|581, 8CF5|1|c|U|582
QA status
Modified nucleotides: OMG, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8CF5|1|c|G|561
8CF5|1|c|OMG|562
8CF5|1|c|U|563
8CF5|1|c|G|564
8CF5|1|c|C|565
8CF5|1|c|C|566
8CF5|1|c|A|567
8CF5|1|c|G|568
*
8CF5|1|c|C|575
8CF5|1|c|G|576
8CF5|1|c|G|577
8CF5|1|c|OMU|578
8CF5|1|c|A|579
8CF5|1|c|A|580
8CF5|1|c|U|581
8CF5|1|c|U|582
8CF5|1|c|C|583
8CF5|1|c|C|584

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain 6
40S ribosomal protein S30-A
Chain Aa
Elongation factor 2
Chain Bb
Transfer RNA; tRNA
Chain Dd
Messenger RNA
Chain g
RPS3 isoform 1
Chain z
40S ribosomal protein S23-A

Coloring options:

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