3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
GCU*A(A2M)C
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CF5_186 not in the Motif Atlas
Homologous match to IL_4V88_417
Geometric discrepancy: 0.0763
The information below is about IL_4V88_417
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_44258.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
301

Unit IDs

8CF5|1|c|G|624
8CF5|1|c|C|625
8CF5|1|c|U|626
*
8CF5|1|c|A|973
8CF5|1|c|A2M|974
8CF5|1|c|C|975

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain 2
40S ribosomal protein S26
Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain p
40S ribosomal protein S13

Coloring options:


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