3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
UUGUCAG*CUUGGAUUUA
Length
17 nucleotides
Bulged bases
8CF5|1|c|G|913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CF5_199 not in the Motif Atlas
Homologous match to IL_8C3A_440
Geometric discrepancy: 0.2493
The information below is about IL_8C3A_440
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_22252.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
1

Unit IDs

8CF5|1|c|U|893
8CF5|1|c|U|894
8CF5|1|c|G|895
8CF5|1|c|U|896
8CF5|1|c|C|897
8CF5|1|c|A|898
8CF5|1|c|G|899
*
8CF5|1|c|C|910
8CF5|1|c|U|911
8CF5|1|c|U|912
8CF5|1|c|G|913
8CF5|1|c|G|914
8CF5|1|c|A|915
8CF5|1|c|U|916
8CF5|1|c|U|917
8CF5|1|c|U|918
8CF5|1|c|A|919

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA
Chain EE
60S ribosomal protein L2-A
Chain e
40S ribosomal protein S1-A
Chain q
40S ribosomal protein S14-A

Coloring options:


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