IL_8CF5_221
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GGUGCUAG*CUGGUUAUCC
- Length
- 18 nucleotides
- Bulged bases
- 8CF5|1|c|U|1370, 8CF5|1|c|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CF5|1|c|G|1351
8CF5|1|c|G|1352
8CF5|1|c|U|1353
8CF5|1|c|G|1354
8CF5|1|c|C|1355
8CF5|1|c|U|1356
8CF5|1|c|A|1357
8CF5|1|c|G|1358
*
8CF5|1|c|C|1365
8CF5|1|c|U|1366
8CF5|1|c|G|1367
8CF5|1|c|G|1368
8CF5|1|c|U|1369
8CF5|1|c|U|1370
8CF5|1|c|A|1371
8CF5|1|c|U|1372
8CF5|1|c|C|1373
8CF5|1|c|C|1374
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain i
- 40S ribosomal protein S5
- Chain s
- 40S ribosomal protein S16-A
- Chain v
- 40S ribosomal protein S19-A
- Chain w
- 40S ribosomal protein S20
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