3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
GUCUAAC*GUAAUC
Length
13 nucleotides
Bulged bases
8CF5|1|c|A|1516
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CF5_224 not in the Motif Atlas
Homologous match to IL_4V88_460
Geometric discrepancy: 0.3182
The information below is about IL_4V88_460
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_77092.1
Basepair signature
cWW-L-R-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

8CF5|1|c|G|1488
8CF5|1|c|U|1489
8CF5|1|c|C|1490
8CF5|1|c|U|1491
8CF5|1|c|A|1492
8CF5|1|c|A|1493
8CF5|1|c|C|1494
*
8CF5|1|c|G|1513
8CF5|1|c|U|1514
8CF5|1|c|A|1515
8CF5|1|c|A|1516
8CF5|1|c|U|1517
8CF5|1|c|C|1518

Current chains

Chain c
18S ribosomal RNA

Nearby chains

Chain 5
HLJ1_G0030400.mRNA.1.CDS.1
Chain g
RPS3 isoform 1
Chain v
40S ribosomal protein S19-A
Chain w
40S ribosomal protein S20

Coloring options:


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