IL_8CF5_226

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_226 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.118

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CF5|1|c|G|1540
8CF5|1|c|G|1541
8CF5|1|c|G|1542
8CF5|1|c|A|1543
8CF5|1|c|U|1544
8CF5|1|c|A|1545
*
8CF5|1|c|U|1566
8CF5|1|c|U|1567
8CF5|1|c|C|1568
8CF5|1|c|A|1569
8CF5|1|c|A|1570
8CF5|1|c|C|1571

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain u

40S ribosomal protein S18-A

Chain v

40S ribosomal protein S19-A