IL_8CF5_245

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UCUAGACAGC*GCCGAA

Length

16 nucleotides

Bulged bases

8CF5|1|AA|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CF5|1|AA|U|1218
8CF5|1|AA|C|1219
8CF5|1|AA|U|1220
8CF5|1|AA|A|1221
8CF5|1|AA|G|1222
8CF5|1|AA|A|1223
8CF5|1|AA|C|1224
8CF5|1|AA|A|1225
8CF5|1|AA|G|1226
8CF5|1|AA|C|1227
*
8CF5|1|AA|G|1282
8CF5|1|AA|C|1283
8CF5|1|AA|C|1284
8CF5|1|AA|G|1285
8CF5|1|AA|A|1286
8CF5|1|AA|A|1287

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain DD

60S acidic ribosomal protein P0

Chain E

60S ribosomal protein L20-A

Chain Y

Ubiquitin-60S ribosomal protein L40