IL_8CF5_251

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CAUAGAG*UUUAUAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CF5|1|AA|C|2444
8CF5|1|AA|A|2445
8CF5|1|AA|U|2446
8CF5|1|AA|A|2447
8CF5|1|AA|G|2448
8CF5|1|AA|A|2449
8CF5|1|AA|G|2450
*
8CF5|1|AA|U|2497
8CF5|1|AA|U|2498
8CF5|1|AA|U|2499
8CF5|1|AA|A|2500
8CF5|1|AA|U|2501
8CF5|1|AA|A|2502
8CF5|1|AA|G|2503

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain U

60S ribosomal protein L36-A

Chain e

40S ribosomal protein S1-A