IL_8CF5_253
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF5_253 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.096
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.2
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CF5|1|AA|C|2889
8CF5|1|AA|A|2890
8CF5|1|AA|U|2891
8CF5|1|AA|A|2892
*
8CF5|1|AA|U|2909
8CF5|1|AA|A|2910
8CF5|1|AA|A|2911
8CF5|1|AA|G|2912
8CF5|1|AA|C|2913
8CF5|1|AA|G|2914
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain FF
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L23-A
- Chain LL
- RPL9A isoform 1
- Chain Y
- Ubiquitin-60S ribosomal protein L40
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