IL_8CF5_254

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CAU*(A2M)AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF5_254 not in the Motif Atlas

Homologous match to IL_8C3A_414

Geometric discrepancy: 0.0925

The information below is about IL_8C3A_414

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8CF5|1|c|C|411
8CF5|1|c|A|412
8CF5|1|c|U|413
*
8CF5|1|c|A2M|420
8CF5|1|c|A|421
8CF5|1|c|G|422

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain H

60S ribosomal protein L23-A

Chain j

40S ribosomal protein S6-A