IL_8CF5_259

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CACAAUAAGGAUUG*CUUGAUUUUGUG

Length

26 nucleotides

Bulged bases

8CF5|1|c|A|1221, 8CF5|1|c|A|1226, 8CF5|1|c|A|1227, 8CF5|1|c|G|1228, 8CF5|1|c|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CF5|1|c|C|1220
8CF5|1|c|A|1221
8CF5|1|c|C|1222
8CF5|1|c|A|1223
8CF5|1|c|A|1224
8CF5|1|c|U|1225
8CF5|1|c|A|1226
8CF5|1|c|A|1227
8CF5|1|c|G|1228
8CF5|1|c|G|1229
8CF5|1|c|A|1230
8CF5|1|c|U|1231
8CF5|1|c|U|1232
8CF5|1|c|G|1233
*
8CF5|1|c|C|1252
8CF5|1|c|U|1253
8CF5|1|c|U|1254
8CF5|1|c|G|1255
8CF5|1|c|A|1256
8CF5|1|c|U|1257
8CF5|1|c|U|1258
8CF5|1|c|U|1259
8CF5|1|c|U|1260
8CF5|1|c|G|1261
8CF5|1|c|U|1262
8CF5|1|c|G|1263

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 5

HLJ1_G0030400.mRNA.1.CDS.1

Chain 8

Ubiquitin-40S ribosomal protein S31

Chain n

40S ribosomal protein S10-A