3D structure

PDB id
8CF8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eravacycline bound to the 30S head
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CF8_010 not in the Motif Atlas
Geometric match to IL_5J7L_050
Geometric discrepancy: 0.0594
The information below is about IL_5J7L_050
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

8CF8|1|A|G|1061
8CF8|1|A|U|1062
8CF8|1|A|C|1063
*
8CF8|1|A|G|1193
8CF8|1|A|U|1194
8CF8|1|A|C|1195

Current chains

Chain A
16S rRNA

Nearby chains

Chain C
Small ribosomal subunit protein uS3
Chain J
Small ribosomal subunit protein uS10
Chain N
Small ribosomal subunit protein uS14

Coloring options:


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