IL_8CF8_010

3D structure

PDB id

8CF8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eravacycline bound to the 30S head

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CF8_010 not in the Motif Atlas

Geometric match to IL_5J7L_050

Geometric discrepancy: 0.0594

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

8CF8|1|A|G|1061
8CF8|1|A|U|1062
8CF8|1|A|C|1063
*
8CF8|1|A|G|1193
8CF8|1|A|U|1194
8CF8|1|A|C|1195

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14