3D structure

PDB id
8CF8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eravacycline bound to the 30S head
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
CUGC*GAGGAAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8CF8_013 not in the Motif Atlas
Geometric match to IL_5J7L_053
Geometric discrepancy: 0.108
The information below is about IL_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42032.1
Basepair signature
cWW-cSH-cWW-tWH-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

8CF8|1|A|C|1158
8CF8|1|A|U|1159
8CF8|1|A|G|1160
8CF8|1|A|C|1161
*
8CF8|1|A|G|1175
8CF8|1|A|A|1176
8CF8|1|A|G|1177
8CF8|1|A|G|1178
8CF8|1|A|A|1179
8CF8|1|A|A|1180
8CF8|1|A|G|1181

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain I
Small ribosomal subunit protein uS9

Coloring options:


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