IL_8CF8_013
3D structure
- PDB id
- 8CF8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eravacycline bound to the 30S head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUGC*GAGGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CF8_013 not in the Motif Atlas
- Geometric match to IL_5J7L_053
- Geometric discrepancy: 0.108
- The information below is about IL_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42032.1
- Basepair signature
- cWW-cSH-cWW-tWH-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
8CF8|1|A|C|1158
8CF8|1|A|U|1159
8CF8|1|A|G|1160
8CF8|1|A|C|1161
*
8CF8|1|A|G|1175
8CF8|1|A|A|1176
8CF8|1|A|G|1177
8CF8|1|A|G|1178
8CF8|1|A|A|1179
8CF8|1|A|A|1180
8CF8|1|A|G|1181
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain I
- Small ribosomal subunit protein uS9
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