IL_8CG8_010

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UGGG*CUUUGUA

Length

11 nucleotides

Bulged bases

8CG8|1|AA|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CG8|1|AA|U|169
8CG8|1|AA|G|170
8CG8|1|AA|G|171
8CG8|1|AA|G|172
*
8CG8|1|AA|C|247
8CG8|1|AA|U|248
8CG8|1|AA|U|249
8CG8|1|AA|U|250
8CG8|1|AA|G|251
8CG8|1|AA|U|252
8CG8|1|AA|A|253

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain KK

60S ribosomal protein L8-A

Chain OO

60S ribosomal protein L13-A

Chain T

60S ribosomal protein L35-A