IL_8CG8_015

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GAAC*GAGUGAAAAAGUAC

Length

18 nucleotides

Bulged bases

8CG8|1|AA|A|398, 8CG8|1|AA|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CG8_015 not in the Motif Atlas

Homologous match to IL_5TBW_014

Geometric discrepancy: 0.0872

The information below is about IL_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8CG8|1|AA|G|376
8CG8|1|AA|A|377
8CG8|1|AA|A|378
8CG8|1|AA|C|379
*
8CG8|1|AA|G|390
8CG8|1|AA|A|391
8CG8|1|AA|G|392
8CG8|1|AA|U|393
8CG8|1|AA|G|394
8CG8|1|AA|A|395
8CG8|1|AA|A|396
8CG8|1|AA|A|397
8CG8|1|AA|A|398
8CG8|1|AA|A|399
8CG8|1|AA|G|400
8CG8|1|AA|U|401
8CG8|1|AA|A|402
8CG8|1|AA|C|403

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L17-A

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain K

60S ribosomal protein L26-A

Chain X

60S ribosomal protein L39