IL_8CG8_087

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8CG8|1|AA|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8CG8_087 not in the Motif Atlas

Geometric match to IL_6JQ6_004

Geometric discrepancy: 0.2266

The information below is about IL_6JQ6_004

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

8CG8|1|AA|U|2200
8CG8|1|AA|G|2201
*
8CG8|1|AA|U|2241
8CG8|1|AA|A|2242
8CG8|1|AA|A|2243
8CG8|1|AA|A|2244

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain c

Small subunit ribosomal RNA; SSU rRNA