IL_8CG8_089
3D structure
- PDB id
- 8CG8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- GAAUG*CGC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8CG8_089 not in the Motif Atlas
- Homologous match to IL_8C3A_092
- Geometric discrepancy: 0.251
- The information below is about IL_8C3A_092
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58579.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8CG8|1|AA|G|2206
8CG8|1|AA|A|2207
8CG8|1|AA|A|2208
8CG8|1|AA|U|2209
8CG8|1|AA|G|2210
*
8CG8|1|AA|C|2235
8CG8|1|AA|G|2236
8CG8|1|AA|C|2237
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain Cc
- Transfer RNA; tRNA
- Chain EE
- 60S ribosomal protein L2-A
- Chain c
- Small subunit ribosomal RNA; SSU rRNA
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