IL_8CG8_103

3D structure

PDB id

8CG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 3 (TI-3) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GUGUAGAAUAAGUGGGAG*CGCCAGUGAAAUACCACUAC

Length

38 nucleotides

Bulged bases

8CG8|1|AA|U|2460, 8CG8|1|AA|G|2481

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CG8|1|AA|G|2452
8CG8|1|AA|U|2453
8CG8|1|AA|G|2454
8CG8|1|AA|U|2455
8CG8|1|AA|A|2456
8CG8|1|AA|G|2457
8CG8|1|AA|A|2458
8CG8|1|AA|A|2459
8CG8|1|AA|U|2460
8CG8|1|AA|A|2461
8CG8|1|AA|A|2462
8CG8|1|AA|G|2463
8CG8|1|AA|U|2464
8CG8|1|AA|G|2465
8CG8|1|AA|G|2466
8CG8|1|AA|G|2467
8CG8|1|AA|A|2468
8CG8|1|AA|G|2469
*
8CG8|1|AA|C|2476
8CG8|1|AA|G|2477
8CG8|1|AA|C|2478
8CG8|1|AA|C|2479
8CG8|1|AA|A|2480
8CG8|1|AA|G|2481
8CG8|1|AA|U|2482
8CG8|1|AA|G|2483
8CG8|1|AA|A|2484
8CG8|1|AA|A|2485
8CG8|1|AA|A|2486
8CG8|1|AA|U|2487
8CG8|1|AA|A|2488
8CG8|1|AA|C|2489
8CG8|1|AA|C|2490
8CG8|1|AA|A|2491
8CG8|1|AA|C|2492
8CG8|1|AA|U|2493
8CG8|1|AA|A|2494
8CG8|1|AA|C|2495

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain Cc

Transfer RNA; tRNA